I have a wemos d1 mini pro with antenna and the only issue I ran into was during flashing. If you set the board type to the pro version it flashes fine but it never tries to connect to Onstep. Set the board type to d1 r2 and mini as per the wiki and all works fine. Just an FYI I you run into the issue.
The only difference I can find in the so called E3 is that the flash has been upgraded to 16Mb. There is probably a scarcity of 4Mb flash due to an overall lack of demand for it. If you go looking for 1-2Gb SD flash these days you pay a premium.
There are still a few problems with D1 mini Pros due to incorrect capacity voltage regulators cropping up. I stay away from vendors with a small inventory as I feel they don't sell at a volume that would clear out their bad inventory. A vendor with a 50-90K inventory also has the leverage to have the assembler take back bad products.
I have 100 good voltage regulators, if anyone wants to try their hand at replacing a bad one.